A urethral discharge is collected on a cotton swab. A sample from this swab is applied in a very thin layer to a microscope slide. The specimen is stained with a series of stains, together called a Gram stain. It is first stained with crystal violet stain, then iodine, then decolorized, then stained with safranin.
The stained smear is then examined under the microscope for the presence of bacteria. The color, size, and morphologic appearance (shape) of the cells help make it possible to identify the infecting organism.
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